Cokelaer, T: search on Z-Library

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1

High acquisition rate of extended-spectrum β-lactamase-producing Enterobacteriaceae among French military personnel on mission abroad, without evidence of inter-individual transmission

Maataoui, N., Mayet, A., Duron, S., Delacour, H., Mentré, F., Laouenan, C., Desvillechabrol, D., Cokelaer, T., Meynard, J.B., Ducher, A., Andremont, A., Armand-Lefèvre, L., Mérens, A.

Journal:

Clinical Microbiology and Infection

Year:

2018

Language:

english

File:

PDF, 1.27 MB

english, 2018

2

Evaluation of methods for modeling transcription factor sequence specificity

Weirauch, Matthew T, Cote, Atina, Norel, Raquel, Annala, Matti, Zhao, Yue, Riley, Todd R, Saez-Rodriguez, Julio, Cokelaer, Thomas, Vedenko, Anastasia, Talukder, Shaheynoor, Agius, Phaedra, Arvey, Aaro

Journal:

Nature Biotechnology

Year:

2013

Language:

english

File:

PDF, 2.05 MB

english, 2013

3

Sequanix: A Dynamic Graphical Interface for Snakemake Workflows

Desvillechabrol, Dimitri, Legendre, Rachel, Rioualen, Claire, Bouchier, Christiane, van Helden, Jacques, Kennedy, Sean, Cokelaer, Thomas

Journal:

Year:

2018

Language:

english

File:

PDF, 437 KB

english, 2018

4

Sharing efforts for modelling plant systems: from publications to reusable software components

Christian Fournier, Christophe Pradal, Michael Chelle, Frédéric Boudon, Gaëtan Louarn, Corinne Robert, Didier Combes, Thomas Cokelaer, Jessica Bertheloot, Kai Ma, Sébastien Saint-Jean, Alban Verdenal,

Journal:

Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology

Year:

2009

Language:

english

File:

PDF, 57 KB

english, 2009

5

Efficient Robust d-Dimensional Path Operators

Cokelaer, F., Talbot, H., Chanussot, J.

Journal:

IEEE Journal of Selected Topics in Signal Processing

Year:

2012

Language:

english

File:

PDF, 1.81 MB

english, 2012

6

CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms

Camille Terfve, Thomas Cokelaer, David Henriques, Aidan MacNamara…

Journal:

BMC Systems Biology

Year:

2012

Language:

english

File:

PDF, 898 KB

english, 2012

7

Gravitational waves from inspiralling compact binaries: Hexagonal template placement and its efficiency in detecting physical signals

Journal:

Physical Review D

Year:

2007

Language:

english

File:

PDF, 1.38 MB

english, 2007

8

Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach

Meyer, Pablo, Cokelaer, Thomas, Chandran, Deepak, Kim, Kyung, Loh, Po-Ru, Tucker, George, Lipson, Mark, Berger, Bonnie, Kreutz, Clemens, Raue, Andreas, Steiert, Bernhard, Timmer, Jens, Bilal, Erhan, D

Journal:

BMC Systems Biology

Year:

2014

Language:

english

File:

PDF, 1.12 MB

english, 2014

9

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools

Chaouiya, Claudine, Bérenguier, Duncan, Keating, Sarah M, Naldi, Aurélien, van Iersel, Martijn P, Rodriguez, Nicolas, Dräger, Andreas, Büchel, Finja, Cokelaer, Thomas, Kowal, Bryan, Wicks, Benjamin, G

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 1.53 MB

english, 2013

10

MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics

Egea, Jose A, Henriques, David, Cokelaer, Thomas, Villaverde, Alejandro F, MacNamara, Aidan, Danciu, Diana-Patricia, Banga, Julio R, Saez-Rodriguez, Julio

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.44 MB

english, 2014

11

[IEEE 2012 IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA) - Shanghai, China (2012.10.31-2012.11.3)] 2012 IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications - Investigating the influence of geometrical traits on light interception efficiency of apple trees: A modelling study with MAppleT

Han, Liqi, Costes, Evelyne, Boudon, Frederic, Cokelaer, Thomas, Pradal, Christophe, Da Silva, David, Faivre, Robert

Year:

2012

Language:

english

File:

PDF, 1.18 MB

english, 2012

12

Template banks to search for compact binaries with spinning components in gravitational wave data

Van Den Broeck, Chris, Brown, Duncan A., Cokelaer, Thomas, Harry, Ian, Jones, Gareth, Sathyaprakash, B. S., Tagoshi, Hideyuki, Takahashi, Hirotaka

Journal:

Physical Review D

Year:

2009

Language:

english

File:

PDF, 449 KB

english, 2009

13

Searching for gravitational waves from binary coalescence

Babak, S., Biswas, R., Brady, P. R., Brown, D. A., Cannon, K., Capano, C. D., Clayton, J. H., Cokelaer, T., Creighton, J. D. E., Dent, T., Dietz, A., Fairhurst, S., Fotopoulos, N., González, G., Hanna

Journal:

Physical Review D

Year:

2013

Language:

english

File:

PDF, 3.31 MB

english, 2013

14

[IEEE IGARSS 2014 - 2014 IEEE International Geoscience and Remote Sensing Symposium - Quebec City, QC (2014.7.13-2014.7.18)] 2014 IEEE Geoscience and Remote Sensing Symposium - Robust path opening versus path opening for the detection of hedgerows in rural landscapes

Fauvel, M., Planque, C., Sheeren, D., Dalla Mura, Mauro, Cokelaer, F., Chanussov, J., Talbot, H.

Year:

2014

Language:

english

File:

PDF, 396 KB

english, 2014

15

Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast

Vaga, S., Bernardo-Faura, M., Cokelaer, T., Maiolica, A., Barnes, C. A., Gillet, L. C., Hegemann, B., van Drogen, F., Sharifian, H., Klipp, E., Peter, M., Saez-Rodriguez, J., Aebersold, R.

Journal:

Molecular Systems Biology

Year:

2014

Language:

english

File:

PDF, 3.43 MB

english, 2014

16

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming

Guziolowski, C., Videla, S., Eduati, F., Thiele, S., Cokelaer, T., Siegel, A., Saez-Rodriguez, J.

Journal:

Year:

2013

Language:

english

File:

PDF, 609 KB

english, 2013

17

SPIE Proceedings [SPIE SPIE Remote Sensing - Edinburgh, United Kingdom (Monday 24 September 2012)] Image and Signal Processing for Remote Sensing XVIII - Hierarchical watershed segmentation based on gradient image simplification

Cokelaer, François, Dalla Mura, Mauro, Chanussot, Jocelyn, Bruzzone, Lorenzo

Year:

2012

Language:

english

File:

PDF, 491 KB

english, 2012

18

L-Py: An L-System Simulation Framework for Modeling Plant Architecture Development Based on a Dynamic Language

Boudon, Frédéric, Pradal, Christophe, Cokelaer, Thomas, Prusinkiewicz, Przemyslaw, Godin, Christophe

Journal:

Frontiers in Plant Science

Year:

2012

Language:

english

File:

PDF, 773 KB

english, 2012

19

BioServices: a common Python package to access biological Web Services programmatically

Cokelaer, T., Pultz, D., Harder, L. M., Serra-Musach, J., Saez-Rodriguez, J.

Journal:

Year:

2013

Language:

english

File:

PDF, 176 KB

english, 2013

20

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming

Guziolowski, C., Videla, S., Eduati, F., Thiele, S., Cokelaer, T., Siegel, A., Saez-Rodriguez, J.

Journal:

Year:

2014

Language:

english

File:

PDF, 38 KB

english, 2014

21

Efficiency of template banks for binary black-hole detection

Cokelaer, Thomas, Babak, Stas, Sathyaprakash, B S

Journal:

Classical and Quantum Gravity

Year:

2004

Language:

english

File:

PDF, 585 KB

english, 2004

22

Parameter estimation of inspiralling compact binaries in ground-based detectors: comparison between Monte Carlo simulations and the Fisher information matrix

Journal:

Classical and Quantum Gravity

Year:

2008

Language:

english

File:

PDF, 623 KB

english, 2008

23

GEO 600 online detector characterization system

Balasubramanian, R, Babak, S, Churches, D, Cokelaer, T

Journal:

Classical and Quantum Gravity

Year:

2005

Language:

english

File:

PDF, 339 KB

english, 2005

24

A template bank to search for gravitational waves from inspiralling compact binaries: II. Phenomenological model

Year:

2007

Language:

english

File:

PDF, 2.60 MB

english, 2007

25

Searching for gravitational-wave signals emitted by eccentric compact binaries using a non-eccentric template bank: implications for ground-based detectors

T. Cokelaer, D. Pathak

Year:

2009

Language:

english

File:

PDF, 2.06 MB

english, 2009

26

Commissioning, characterization and operation of the dual-recycled GEO 600

Smith, J R, Allen, B, Aufmuth, P, Aulbert, C, Babak, S, Balasubramanian, R, Barr, B W, Berukoff, S, Bunkowski, A, Cagnoli, G, Cantley, C A, Casey, M M, Chelkowski, S, Churches, D, Cokelaer, T, Colacin

Journal:

Classical and Quantum Gravity

Year:

2004

Language:

english

File:

PDF, 360 KB

english, 2004

27

A template bank to search for gravitational waves from inspiralling compact binaries: I. Physical models

Babak, S, Balasubramanian, R, Churches, D, Cokelaer, T, Sathyaprakash, B S

Journal:

Classical and Quantum Gravity

Year:

2006

Language:

english

File:

PDF, 1013 KB

english, 2006

28

Searching for gravitational waves from binary inspirals with LIGO

Brown, Duncan A, Babak, Stanislav, Brady, Patrick R, Christensen, Nelson, Cokelaer, Thomas, Creighton, Jolien D E, Fairhurst, Stephen, González, Gabriela, Messaritaki, Eirini, Sathyaprakash, B S, Shaw

Journal:

Classical and Quantum Gravity

Year:

2004

Language:

english

File:

PDF, 775 KB

english, 2004

29

The status of GEO 600

Grote, H, Allen, B, Aufmuth, P, Aulbert, C, Babak, S, Balasubramanian, R, Barr, B W, Berukoff, S, Bunkowski, A, Cagnoli, G, Cantley, C A, Casey, M M, Chelkowski, S, Churches, D, Cokelaer, T, Colacino,

Journal:

Classical and Quantum Gravity

Year:

2005

Language:

english

File:

PDF, 99 KB

english, 2005

30

Inferring causal molecular networks: empirical assessment through a community-based effort

Hill, Steven M, Heiser, Laura M, Cokelaer, Thomas, Unger, Michael, Nesser, Nicole K, Carlin, Daniel E, Zhang, Yang, Sokolov, Artem, Paull, Evan O, Wong, Chris K, Graim, Kiley, Bivol, Adrian, Wang, Hai

Journal:

Year:

2016

Language:

english

File:

PDF, 1.32 MB

english, 2016

31

[IEEE 2014 IEEE International Conference on Image Processing (ICIP) - Paris, France (2014.10.27-2014.10.30)] 2014 IEEE International Conference on Image Processing (ICIP) - Selective and robust d-dimensional path operators

Cokelaer, F., Mura, M. Dalla, Talbot, H., Chanussot, J.

Year:

2014

File:

PDF, 398 KB

2014

32

[IEEE 2014 IEEE International Conference on Image Processing (ICIP) - Paris, France (2014.10.27-2014.10.30)] 2014 IEEE International Conference on Image Processing (ICIP) - Selective and robust d-dimensional path operators

Cokelaer, F., Mura, M. Dalla, Talbot, H., Chanussot, J.

Year:

2014

Language:

english

File:

PDF, 398 KB

english, 2014

33

Report on the search for binary black holes inspiral in S3 LIGO data

Cokelaer, Thomas, collaboration, the LIGO Scientific

Journal:

Journal of Physics Conference Series

Year:

2006

Language:

english

File:

PDF, 666 KB

english, 2006

34

A Landscape of Pharmacogenomic Interactions in Cancer

Iorio, Francesco, Knijnenburg, Theo A., Vis, Daniel J., Bignell, Graham R., Menden, Michael P., Schubert, Michael, Aben, Nanne, Gonçalves, Emanuel, Barthorpe, Syd, Lightfoot, Howard, Cokelaer, Thomas,

Journal:

Year:

2016

Language:

english

File:

PDF, 2.66 MB

english, 2016

35

Drug resistance mechanisms in colorectal cancer dissected with cell type-specific dynamic logic models

Eduati, Federica, Doldàn-Martelli, Victoria, Klinger, Bertram, Cokelaer, Thomas, Sieber, Anja, Kogera, Fiona, Dorel, Mathurin, Garnett, Mathew J., Blüthgen, Nils, Saez-Rodriguez, Julio

Journal:

Cancer Research

Year:

2017

Language:

english

File:

PDF, 3.84 MB

english, 2017

36

Efficient randomization of biological networks while preserving functional characterization of individual nodes

Francesco Iorio,Marti Bernardo-Faura,Andrea Gobbi,Thomas Cokelaer…

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.63 MB

english, 2016

37

GDSCTools for mining pharmacogenomic interactions in cancer

Cokelaer, Thomas, Chen, Elisabeth, Iorio, Francesco, Menden, Michael P, Lightfoot, Howard, Saez-Rodriguez, Julio, Garnett, Mathew J

Journal:

Year:

2017

Language:

english

File:

PDF, 139 KB

english, 2017

38

Sequana Coverage: Detection and Characterization of Genomic Variations using Running Median and Mixture Models

Desvillechabrol, Dimitri, Bouchier, Christiane, Kennedy, Sean, Cokelaer, Thomas

Journal:

Year:

2018

Language:

english

File:

PDF, 2.63 MB

english, 2018

39

SENSITIVITY ANALYSIS OF LIGHT INTERCEPTION TO GEOMETRICAL TRAITS OF APPLE TREES: AN IN SILICO STUDY BASED ON MAPPLET MODEL

Han, L., Soulié, J.-C., Boudon, F., Da Silva, D., Cokelaer, T., Pradal, C., Rouan, L., Costes, E.

Journal:

Acta Horticulturae

Year:

2015

Language:

english

File:

PDF, 608 KB

english, 2015

40

Compatibility of 5-ethynyl-2’F-ANA UTP with in vitro selection for the generation of base-modified, nuclease resistant aptamers

Levi-Acobas, Fabienne, Katolik, Adam, Röthlisberger, Pascal, Cokelaer, Thomas, Sarac, Ivo, Damha, Masad J, Leumann, Christian Joerg, Hollenstein, Marcel

Journal:

Organic & Biomolecular Chemistry

Year:

2019

File:

PDF, 1.31 MB

2019

41

Autotransporters Drive Biofilm Formation and Autoaggregation in the Diderm Firmicute Veillonella parvula

BÃ©chon, Nathalie, JimÃ©nez-FernÃ¡ndez, Alicia, Witwinowski, Jerzy, Bierque, Emilie, Taib, Najwa, Cokelaer, Thomas, Ma, Laurence, Ghigo, Jean-Marc, Gribaldo, Simonetta, Beloin, Christophe, Silhavy, Th

Journal:

Journal of Bacteriology

Year:

2020

File:

PDF, 10.20 MB

2020